According to Eva Air route map, they fly to both Penang and Kuala Lumpur
But seems like TPE-PEN-TPE had been temporarily suspended.
http://www.evaair.com/html/b2c/Chinese/eva.../Flight_routes/
TPE-KUL
BR0227 Mon, Thu, Fri, Sat, 09:40 - 14:10 Equipment: 763
KUL-TPE
BR0228 Mon, Thu, Fri, Sat, 15:20 - 20:05 Equipment: 763